Mercurial > repos > yating-l > hub_test
comparison test-data/two_groups_multiple_tracks/__main__.log @ 0:abcfd662b679 draft default tip
planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test.git commit 199ae2b10f3b3e58cb4d4a3b9fb4b35db415c538-dirty
| author | yating-l |
|---|---|
| date | Thu, 22 Dec 2016 17:53:00 -0500 |
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| children |
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| -1:000000000000 | 0:abcfd662b679 |
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| 1 DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### | |
| 2 | |
| 3 DEBUG:root:Calling faToTwoBit: | |
| 4 DEBUG:root:--------- | |
| 5 DEBUG:root: | |
| 6 DEBUG:root:Calling twoBitInfo: | |
| 7 DEBUG:root:--------- | |
| 8 DEBUG:root: | |
| 9 DEBUG:root:Calling sort: | |
| 10 DEBUG:root:--------- | |
| 11 DEBUG:root: | |
| 12 DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1193.dat | |
| 13 DEBUG:root:data_value: {u'index': u'/home/svc_galaxy/new/galaxy/database/files/_metadata_files/000/metadata_77.dat', u'order_index': u'11', u'name': u'HISAT2_Accepted_Hits', u'track_color': u'#000000', u'group_name': u'Default group'} | |
| 14 DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1195.dat | |
| 15 DEBUG:root:data_value: {u'order_index': u'10', u'name': u'RNA-Seq_Alignment_Summary', u'track_color': u'#000000', u'group_name': u'Default group'} | |
| 16 DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1188.dat | |
| 17 DEBUG:root:data_value: {u'order_index': u'21', u'name': u'Multi-Fasta_GlimmerHMM_Gene_Predictions', u'track_color': u'#000000', u'group_name': u'Other group'} | |
| 18 DEBUG:root:Calling gff3ToGenePred: | |
| 19 DEBUG:root:--------- | |
| 20 DEBUG:root: | |
| 21 DEBUG:root:Calling genePredToBigGenePred: | |
| 22 DEBUG:root:--------- | |
| 23 DEBUG:root: | |
| 24 DEBUG:root:Calling sort: | |
| 25 DEBUG:root:--------- | |
| 26 DEBUG:root: | |
| 27 DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpC7M6B_.sorted.bigGenePred | |
| 28 DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmppQM471.chrom.sizes | |
| 29 DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/tracks/Multi-Fasta_GlimmerHMM_Gene_Predictions.bb | |
| 30 DEBUG:root:typeOption: bed12+8 | |
| 31 DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as | |
| 32 DEBUG:root:tab option: True | |
| 33 DEBUG:root:Calling bedToBigBed: | |
| 34 DEBUG:root:--------- | |
| 35 DEBUG:root: | |
| 36 DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1197.dat | |
| 37 DEBUG:root:data_value: {u'order_index': u'20', u'name': u'StringTie_Assembled_Transcripts', u'track_color': u'#000000', u'group_name': u'Other group'} | |
| 38 DEBUG:root:Calling gtfToGenePred: | |
| 39 DEBUG:root:--------- | |
| 40 DEBUG:root: | |
| 41 DEBUG:root:Calling genePredToBigGenePred: | |
| 42 DEBUG:root:--------- | |
| 43 DEBUG:root: | |
| 44 DEBUG:root:Calling sort: | |
| 45 DEBUG:root:--------- | |
| 46 DEBUG:root: | |
| 47 DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpirJDCW.sortedBed.bigGenePred | |
| 48 DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmppQM471.chrom.sizes | |
| 49 DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb | |
| 50 DEBUG:root:typeOption: bed12+8 | |
| 51 DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as | |
| 52 DEBUG:root:tab option: True | |
| 53 DEBUG:root:Calling bedToBigBed: | |
| 54 DEBUG:root:--------- | |
| 55 DEBUG:root: | |
| 56 DEBUG:root:----- End of all_datatype_dictionary processing ----- | |
| 57 DEBUG:root:all_datatype_ordered_dictionary keys are: [<Bam.Bam object at 0x1b78b90>, <BigWig.BigWig object at 0x1b78e10>, <Gtf.Gtf object at 0x1b78e90>, <Gff3.Gff3 object at 0x1b78e50>] | |
| 58 DEBUG:root:----- Beginning of Track adding processing ----- | |
| 59 DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/groups.txt the group Default group | |
| 60 DEBUG:root:We just added track HISAT2_Accepted_Hits.bam (in group default_group) | |
| 61 DEBUG:root:We DON'T add in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/groups.txt the group Default group | |
| 62 DEBUG:root:We just added track RNA-Seq_Alignment_Summary.bigwig (in group default_group) | |
| 63 DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/groups.txt the group Other group | |
| 64 DEBUG:root:We just added track StringTie_Assembled_Transcripts.bb (in group other_group) | |
| 65 DEBUG:root:We DON'T add in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/915/dataset_1283_files/myHub/Dbia3/groups.txt the group Other group | |
| 66 DEBUG:root:We just added track Multi-Fasta_GlimmerHMM_Gene_Predictions.bb (in group other_group) | |
| 67 DEBUG:root:----- End of Track adding processing ----- | |
| 68 DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! #### |