diff apolloUserManager.xml @ 1:78af01d73add draft

planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty

--- a/apolloUserManager.xml	Mon Nov 27 14:47:03 2017 -0500
+++ b/apolloUserManager.xml	Tue Nov 28 12:43:22 2017 -0500
@@ -14,7 +14,7 @@
     </stdio>
 
     <command detect_errors="exit_code"><![CDATA[
-
+        mkdir -p $output.extra_files_path;
         ## Dump the tool parameters into a JSON file 
         python $json_file parameters.json;
         python $__tool_directory__/apolloUserManager.py --data_json parameters.json -o $output
@@ -92,6 +92,7 @@
 #set apollo_admin = {"user_email": str($admin_username), "password": str($admin_password)}
 #silent $data_parameter_dict.update({"apollo_admin": $apollo_admin})
 #silent $data_parameter_dict.update({"tool_directory": str($__tool_directory__)})
+#silent $data_parameter_dict.update({"extra_files_path": str($output.extra_files_path)})
 #silent $data_parameter_dict.update({"port": str($advanced_options.port)})
 #silent $data_parameter_dict.update({"debug_mode": str($advanced_options.debug_mode)})
 with open(file_path, 'w') as f:
@@ -236,7 +237,7 @@
         </conditional>
     </inputs>
     <outputs>
-        <data format="html" name="output" label="${tool.name}" />
+        <data format="txt" name="output" label="${tool.name} on ${on_string}" />
     </outputs>
 
     <help>