Mercurial > repos > yating-l > gonramp_apollo_tools
comparison apolloUserManager.py @ 2:4be6fcac4bf2 draft default tip
planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 5367a00befb467f162d1870edb91f9face72e894
author | yating-l |
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date | Wed, 29 Nov 2017 15:39:32 -0500 |
parents | 78af01d73add |
children |
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1:78af01d73add | 2:4be6fcac4bf2 |
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46 logging.debug('JSON parameters: %s\n\n', json.dumps(reader.args)) | 46 logging.debug('JSON parameters: %s\n\n', json.dumps(reader.args)) |
47 | 47 |
48 # Set up apollo | 48 # Set up apollo |
49 apollo = ApolloInstance(apollo_host, apollo_admin_user, toolDirectory) | 49 apollo = ApolloInstance(apollo_host, apollo_admin_user, toolDirectory) |
50 apollo.manageApolloUser(operations_dictionary) | 50 apollo.manageApolloUser(operations_dictionary) |
51 | 51 outHtml(outputFile, apollo_host) |
52 logging.info('#### Apollo User Manager: Congratulation! ####\n') | 52 logging.info('#### Apollo User Manager: Congratulation! ####\n') |
53 | 53 |
54 def outHtml(outputFile, host_name): | |
55 with open(outputFile, 'w') as htmlfile: | |
56 htmlstr = 'The Apollo User Manager has done with operations on Apollo: <br>' | |
57 jbrowse_hub = '<li><a href = "%s" target="_blank">View JBrowse Hub on Apollo</a></li>' % host_name | |
58 htmlstr += jbrowse_hub | |
59 htmlfile.write(htmlstr) | |
54 | 60 |
55 | 61 |
56 if __name__ == "__main__": | 62 if __name__ == "__main__": |
57 main(sys.argv) | 63 main(sys.argv) |