# HG changeset patch
# User yating-l
# Date 1486146093 18000
# Node ID cabe1df9d31a98400b7c3ad5d65e24a525b2c7cd
# Parent  da5fba0ed4fc79d5bb759085d9129d08a976a8ff
planemo upload commit 56d60a9f66cc04ee92cbc568dd40b4353dab8b62-dirty

diff -r da5fba0ed4fc -r cabe1df9d31a README.rst
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.rst	Fri Feb 03 13:21:33 2017 -0500
@@ -0,0 +1,33 @@
+gbToFasta
+==========================================================
+Galaxy wrapper for UCSC tools gbToFasta and raToTab. Convert GenBank records to fasta and create table with coding regions information for each mRNA record.
+
+gbToFasta
+---------
+
+gbToFaRa - Convert GenBank flat format file to an fa file containing
+the sequence data, an ra file containing other relevant info and
+a ta file containing summary statistics.
+
+usage:
+  gbToFaRa filterFile faFile raFile taFile genBankFile(s)
+  where filterFile is definition of which records and fields
+  use /dev/null if you want no filtering.
+
+  $ gbToFaRa /dev/null gbfile.fa gbfile.ra gbfile.ta gbfile
+
+raToTab
+--------
+raToTab - Create table with coding regions information for each mRNA record
+
+usage:
+  raToTab -cols=acc,cds gbfile.ra gbfile.cds
+
+Source code:
+============
+
+http://hgdownload.cse.ucsc.edu/admin/exe/
+
+Licence
+-------
+Please note that commercial download and installation of the Blat and In-Silico PCR software may be licensed through Kent Informatics (http://www.kentinformatics.com).
diff -r da5fba0ed4fc -r cabe1df9d31a gbToFasta.xml
--- a/gbToFasta.xml	Fri Feb 03 11:30:42 2017 -0500
+++ b/gbToFasta.xml	Fri Feb 03 13:21:33 2017 -0500
@@ -28,7 +28,7 @@
       </inputs>
       <outputs>
             <data format="fasta" name="outputfa" label="${tool.name} on ${on_string}:fasta"></data>
-            <data format="fasta" name="outputcds" label="${tool.name} on ${on_string}:cds">
+            <data format="tabular" name="outputcds" label="${tool.name} on ${on_string}:cds">
                   <filter>cds == "yes"</filter>
             </data>
       </outputs>