Mercurial > repos > yating-l > gbtofasta
diff README.rst @ 5:e195691d3e71 draft
planemo upload commit 10faac43ed16e0bd479f2e9a7d76ccd08b2a5af8-dirty
| author | yating-l |
|---|---|
| date | Thu, 28 Sep 2017 16:25:57 -0400 |
| parents | cabe1df9d31a |
| children |
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--- a/README.rst Tue Aug 08 17:53:39 2017 -0400 +++ b/README.rst Thu Sep 28 16:25:57 2017 -0400 @@ -1,6 +1,6 @@ gbToFasta ========================================================== -Galaxy wrapper for UCSC tools gbToFasta and raToTab. Convert GenBank records to fasta and create table with coding regions information for each mRNA record. +Galaxy wrapper for UCSC tools gbToFasta and raToTab. Convert GenBank records to fasta, create TRIX index, and create table with coding regions information for each mRNA record. gbToFasta --------- @@ -18,10 +18,21 @@ raToTab -------- -raToTab - Create table with coding regions information for each mRNA record + +* Create table with coding regions information for each mRNA record + + raToTab -cols=acc,cds gbfile.ra gbfile.cds + + +* Create TRIX index -usage: - raToTab -cols=acc,cds gbfile.ra gbfile.cds + #. Create search index and metadata + + raToTab -cols=acc,def gbfile.ra gbfile.info + + #. Create TRIX index + + ixIxx gbfile.info gbfile.ix gbfile.ixx Source code: ============