diff README.rst @ 2:cabe1df9d31a draft

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+gbToFasta
+==========================================================
+Galaxy wrapper for UCSC tools gbToFasta and raToTab. Convert GenBank records to fasta and create table with coding regions information for each mRNA record.
+
+gbToFasta
+---------
+
+gbToFaRa - Convert GenBank flat format file to an fa file containing
+the sequence data, an ra file containing other relevant info and
+a ta file containing summary statistics.
+
+usage:
+  gbToFaRa filterFile faFile raFile taFile genBankFile(s)
+  where filterFile is definition of which records and fields
+  use /dev/null if you want no filtering.
+
+  $ gbToFaRa /dev/null gbfile.fa gbfile.ra gbfile.ta gbfile
+
+raToTab
+--------
+raToTab - Create table with coding regions information for each mRNA record
+
+usage:
+  raToTab -cols=acc,cds gbfile.ra gbfile.cds
+
+Source code:
+============
+
+http://hgdownload.cse.ucsc.edu/admin/exe/
+
+Licence
+-------
+Please note that commercial download and installation of the Blat and In-Silico PCR software may be licensed through Kent Informatics (http://www.kentinformatics.com).