Mercurial > repos > yating-l > data_manager_fetch_reference_data
changeset 18:dda792940610 draft
planemo upload
| author | yating-l |
|---|---|
| date | Thu, 04 May 2017 12:28:28 -0400 |
| parents | 8acd0b4359cc |
| children | df19bb35a495 |
| files | data_manager/fetch_reference_data.py data_manager_conf.xml |
| diffstat | 2 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/data_manager/fetch_reference_data.py Thu May 04 12:24:20 2017 -0400 +++ b/data_manager/fetch_reference_data.py Thu May 04 12:28:28 2017 -0400 @@ -11,7 +11,6 @@ from galaxy.util.json import from_json_string, to_json_string -CHUNK_SIZE = 2**20 #1mb def cleanup_before_exit(tmp_dir): if tmp_dir and os.path.exists(tmp_dir):
--- a/data_manager_conf.xml Thu May 04 12:24:20 2017 -0400 +++ b/data_manager_conf.xml Thu May 04 12:28:28 2017 -0400 @@ -6,11 +6,11 @@ <column name="value" /> <column name="name" /> <column name="path" output_ref="out_file"> - <move type="file"> + <move type="directory"> <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH">${value}/${path}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH">${name}/${path}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${name}/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>