# HG changeset patch
# User yating-l
# Date 1493850917 14400
# Node ID 85e817cdf4bd66e57a073c6a14493364413acce9
# Parent  f2e535e1b45c45330bbd637f85a60512229304c8
planemo upload

diff -r f2e535e1b45c -r 85e817cdf4bd data_manager/fetch_reference_data.py
--- a/data_manager/fetch_reference_data.py	Wed May 03 18:24:19 2017 -0400
+++ b/data_manager/fetch_reference_data.py	Wed May 03 18:35:17 2017 -0400
@@ -50,13 +50,13 @@
     glimmerhmm_trained_dir = os.path.join(downloadpath, 'GlimmerHMM', 'trained_dir', sequence_id)
     glimmerhmm_trained_target_dir = os.path.join(target_directory, sequence_id)
     shutil.copytree(glimmerhmm_trained_dir, glimmerhmm_trained_target_dir)
-    data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir.strip('/'))
+    data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir)
     _add_data_table_entry(data_manager_dict, data_table_entry)
     
     cleanup_before_exit('tmp')
 
 def _add_data_table_entry(data_manager_dict, data_table_entry):
-    data_manager_dict['data_tables'] = data_manager_dict.get( 'data_tables', {} )
+    data_manager_dict['data_tables'] = data_manager_dict.get('data_tables', {})
     data_manager_dict['data_tables']['glimmer_hmm_trained_dir'] = data_manager_dict['data_tables'].get('glimmer_hmm_trained_dir', [])
     data_manager_dict['data_tables']['glimmer_hmm_trained_dir'].append(data_table_entry)
     return data_manager_dict
diff -r f2e535e1b45c -r 85e817cdf4bd data_manager_conf.xml
--- a/data_manager_conf.xml	Wed May 03 18:24:19 2017 -0400
+++ b/data_manager_conf.xml	Wed May 03 18:35:17 2017 -0400
@@ -6,7 +6,7 @@
                     <column name="value" />
                     <column name="name" />
                     <column name="path" output_ref="out_file">
-                        <move type="file">
+                        <move type="directory">
                             <source>${path}</source>
                             <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${name}/${path}</target>
                         </move>