comparison data_manager/fetch_reference_data.py @ 4:464d75111b16 draft

planemo upload

3:2804b5f00dc7

    data_manager_dict = {}

    sequence_id, sequence_name = get_reference_id_name(params)

    #Fetch the FASTA
    REFERENCE_SOURCE_TO_DOWNLOAD[params['param_dict']['file_path']](data_manager_dict, params, target_directory, sequence_id, sequence_name)

    #save info to json file
    open(filename, 'wb').write(to_json_string(data_manager_dict))

if __name__ == "__main__":

4:464d75111b16

    data_manager_dict = {}

    sequence_id, sequence_name = get_reference_id_name(params)

    #Fetch the FASTA
    REFERENCE_SOURCE_TO_DOWNLOAD[params['param_dict']['trained_dir']](data_manager_dict, params, target_directory, sequence_id, sequence_name)

    #save info to json file
    open(filename, 'wb').write(to_json_string(data_manager_dict))

if __name__ == "__main__":