comparison macros.xml @ 0:59453ad6e219 draft

"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hedm_lattice_parameter_correction commit 420bbed5449757711b88200208bb050e0797f5a3"

0:59453ad6e219

<macros>
    <token name="@TOOL_VERSION@">0.8.19</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">21.09</token>
    <xml name="requirements">
        <requirements>
        <requirement type="package" version="@TOOL_VERSION@">hexrd</requirement>
            <yield/>
        </requirements>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1016/j.matchar.2020.110366</citation>
            <yield />
        </citations>
    </xml>

    <token name="@CMD_IMPORTS@">
#import re
#import yaml
#def identifier_or_name($input1)
    #if hasattr($input1, 'element_identifier')
        #return $input1.element_identifier
    #elif hasattr($input1, 'name')
        #return $input1.name
    #else
        #return str($input1)
    #end if
#end def
#def clean($name1)
    #set $name_clean = $re.sub('[^\w\-_]', '_', $re.sub('(?i)[.](npz|hexrd|yml|dat|out)$','', $name1.split()[-1]))
    #return $name_clean
#end def
#def ln_name($ds,$ext)
    #set $lname = "%s.%s" % ($clean($identifier_or_name($ds)),$ext)
    #return $lname
#end def
#def update_config($cfg_in, $mat_path, $inst_path)
    #set $cfg = $yaml.safe_load(open(str($cfg_in),'r'))    
    #if $mat_path and 'material' in $cfg and 'definitions' in $cfg['material']
        #silent $cfg['material']['definitions'] = str($mat_path)
    #end if
    #if $inst_path and 'instrument' in $cfg 
        #silent $cfg['instrument'] = str($inst_path)
    #end if
#slurp
$yaml.dump($cfg)
#end def
    </token>
</macros>