Mercurial > repos > ximgchess > chap_test_20230411
changeset 162:e51b6d230dd8 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit bd55c86b9f7bfabff0bbec1f10704850fec82f02-dirty
| author | ximgchess |
|---|---|
| date | Fri, 30 Jun 2023 16:05:57 +0000 |
| parents | f524e7c848f6 |
| children | 952a2cf9e629 |
| files | chapbook_demo/chapbook_demo.xml |
| diffstat | 1 files changed, 4 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/chapbook_demo/chapbook_demo.xml Fri Jun 30 15:48:59 2023 +0000 +++ b/chapbook_demo/chapbook_demo.xml Fri Jun 30 16:05:57 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy8" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@"> +<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy9" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@"> <macros> <import>../macros.xml</import> </macros> @@ -16,7 +16,8 @@ ## Create symlinks in the tool directory to all items in the ## input directory provided by the user #import os.path - #set $norm_indir = os.path.normpath($indir) + #set $usr_indir = $indir + #set $norm_indir = os.path.normpath($usr_indir) ln -s '$norm_indir'/* '$__tool_directory__' && ## Run the pipeline provided @@ -30,7 +31,7 @@ </environment_variables> <inputs> <param type="data" name="config" format="yaml" label="Pipeline Configuration File" /> - <param type="text" name="indir" label="Input Directory" /> + <param type="text" name="indir" label="Input Directory" help="DO NOT include a trailing slash"/> </inputs> <outputs> <data name="data" format="nex" label="I vs q NeXus Data" />