changeset 85:d58f090c7073 draft

planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 68cb427ae89554b84bb7eb9f1ff9ab1497539208
author ximgchess
date Fri, 19 May 2023 10:15:42 +0000
parents 1e02b5c4abdf
children dadfe8bcbc0d
files saxswaxs/.reduce.xml.swp tomo/tomo_macros.xml tomo/tomo_reduce.xml
diffstat 3 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
Binary file saxswaxs/.reduce.xml.swp has changed
--- a/tomo/tomo_macros.xml	Mon May 15 19:15:16 2023 +0000
+++ b/tomo/tomo_macros.xml	Fri May 19 10:15:42 2023 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@TOOL_VERSION@">0.1.0</token>
     <token name="@PROFILE@">21.09</token>
-    <token name="@PYTHON_TEMPLATE_VERSION@">3.9</token>
+    <token name="@PYTHON_TEMPLATE_VERSION@">3.11</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="0.0.7">chessanalysispipeline</requirement>
--- a/tomo/tomo_reduce.xml	Mon May 15 19:15:16 2023 +0000
+++ b/tomo/tomo_reduce.xml	Fri May 19 10:15:42 2023 +0000
@@ -6,7 +6,8 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code">
         <![CDATA[
-        mkdir tomo_reduce_plots;
+        export PYTHONPATH=$PWD/.local/lib/python3.11/site-packages:$PYTHONPATH &&
+        mkdir tomo_reduce_plots &&
         #if str($map.type_selector) == "yaml"
             cp $input_file map.yaml &&
             cat $__tool_directory__/$map.detector.type_selector $tool_config > reduce.yaml &&