Mercurial > repos > ximgchess > chap_test_20230411

changeset 54:70992f91d75f draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit eda217fb0afe5af50380a24b578c668db9c004f4-dirty
author ximgchess
date Wed, 12 Apr 2023 18:42:57 +0000
parents e6848e9c1c3c
children 55740619de5e
files tomo/.tomo_reduce.xml.swp tomo/pip_install.sh tomo/tomo_reduce.xml
diffstat 3 files changed, 11 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
Binary file tomo/.tomo_reduce.xml.swp has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tomo/pip_install.sh	Wed Apr 12 18:42:57 2023 +0000
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+VERSION=`python --version | awk '{split($2,a,"."); printf "%s.%s", a[1], a[2]}'`
+PIPLOC=`which python | sed 's/bin\/python//g'`
+PIPLOC=$PIPLOC/lib/python$VERSION/site-packages
+echo $PIPLOC
+
+pip --exists-action i install --target $PIPLOC $1
--- a/tomo/tomo_reduce.xml	Wed Apr 12 16:46:04 2023 +0000
+++ b/tomo/tomo_reduce.xml	Wed Apr 12 18:42:57 2023 +0000
@@ -6,9 +6,9 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code">
         <![CDATA[
-        which python &&
-        which CHAP &&
-        python --version &&
+        $__tool_directory__/pip_install.sh &&
+        echo $__tool_directory__ &&
+        ls $__tool_directory__/.. &&
         cp $tool_config reduce.yaml
         ]]>
     </command>