Mercurial > repos > ximgchess > chap_test_20230411
changeset 130:5bf5e5fb672e draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit dfe15e79689bca8ddcd843f9cf47eff29f6ee2e4-dirty
| author | ximgchess |
|---|---|
| date | Tue, 20 Jun 2023 11:58:39 +0000 |
| parents | 4419a9789d92 |
| children | 905acff8ffdb |
| files | saxswaxs/PIL5.poni saxswaxs/PIL5.tif saxswaxs/det.poni saxswaxs/integration.yaml saxswaxs/map.yaml saxswaxs/reduce.xml saxswaxs/test_1d saxswaxs/test_1d_001/test_1d_PIL11_001_000.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_001.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_002.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_003.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_004.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_005.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_006.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_007.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_008.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_009.tiff saxswaxs/test_1d_001/test_1d_PIL11_001_010.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_000.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_001.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_002.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_003.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_004.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_005.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_006.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_007.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_008.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_009.tiff saxswaxs/test_1d_001/test_1d_PIL5_001_010.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_000.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_001.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_002.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_003.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_004.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_005.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_006.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_007.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_008.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_009.tiff saxswaxs/test_1d_001/test_1d_PIL9_001_010.tiff saxswaxs/test_scans saxswaxs/test_scans_001/test_scans_det_001_000.tiff saxswaxs/test_scans_001/test_scans_det_001_001.tiff saxswaxs/test_scans_001/test_scans_det_001_002.tiff saxswaxs/test_scans_002/test_scans_det_002_000.tiff saxswaxs/test_scans_002/test_scans_det_002_001.tiff saxswaxs/test_scans_002/test_scans_det_002_002.tiff saxswaxs/test_scans_003/test_scans_det_003_000.tiff saxswaxs/test_scans_003/test_scans_det_003_001.tiff saxswaxs/test_scans_003/test_scans_det_003_002.tiff |
| diffstat | 50 files changed, 50 insertions(+), 136 deletions(-) [+] |
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--- a/saxswaxs/PIL5.poni Tue Jun 20 11:35:00 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,12 +0,0 @@ -# Nota: C-Order, 1 refers to the Y axis, 2 to the X axis -# Calibration done at Wed Dec 1 09:43:02 2021 -poni_version: 2 -Detector: Pilatus300k -Detector_config: {} -Distance: 1.6482087488134558 -Poni1: 0.1678687786895594 -Poni2: 0.13236163515363114 -Rot1: 0.05582857735072926 -Rot2: -0.07300334677284326 -Rot3: 3.757385675073369e-05 -Wavelength: 1.2781876020248165e-10
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/saxswaxs/det.poni Tue Jun 20 11:58:39 2023 +0000 @@ -0,0 +1,12 @@ +# Nota: C-Order, 1 refers to the Y axis, 2 to the X axis +# Calibration done at Wed May 24 10:05:27 2023 +poni_version: 2 +Detector: Pilatus300k +Detector_config: {} +Distance: 1 +Poni1: 0 +Poni2: 0 +Rot1: 0 +Rot2: 0 +Rot3: 0 +Wavelength: 1.54e-10
--- a/saxswaxs/integration.yaml Tue Jun 20 11:35:00 2023 +0000 +++ b/saxswaxs/integration.yaml Tue Jun 20 11:58:39 2023 +0000 @@ -1,15 +1,14 @@ tool_type: integration -title: saxs_azimuthal +title: reduced_data integration_type: azimuthal detectors: -- prefix: PIL5 - poni_file: PIL5.poni - mask_file: PIL5.tif -radial_units: q_A^-1 -radial_min: 0.0 -radial_max: 0.21821 +- prefix: det + poni_file: det.poni +radial_units: q_nm^-1 +radial_min: 0.01372382 +radial_max: 5.47580553 radial_npt: 200 azimuthal_units: chi_deg azimuthal_min: -180.0 azimuthal_max: 180.0 -azimuthal_npt: 180 +azimuthal_npt: 180 \ No newline at end of file
--- a/saxswaxs/map.yaml Tue Jun 20 11:35:00 2023 +0000 +++ b/saxswaxs/map.yaml Tue Jun 20 11:58:39 2023 +0000 @@ -2,22 +2,16 @@ station: id3b experiment_type: SAXSWAXS sample: - name: sample_14_align + name: sample_name spec_scans: -- spec_file: test_1d - scan_numbers: - - 1 +- spec_file: test_scans + scan_numbers: [1, 2, 3] independent_dimensions: -- label: samx +- label: mtr_0 units: mm data_type: spec_motor - name: samx -presample_intensity: - data_type: scan_column - name: ic3 -dwell_time_actual: - data_type: scan_column - name: sec_2 -postsample_intensity: - data_type: scan_column - name: diode + name: mtr_0 +- label: mtr_1 + units: mm + data_type: spec_motor + name: mtr_1
--- a/saxswaxs/reduce.xml Tue Jun 20 11:35:00 2023 +0000 +++ b/saxswaxs/reduce.xml Tue Jun 20 11:58:39 2023 +0000 @@ -36,14 +36,5 @@ ]]></help> <citations> <citation type="doi">10.5281/zenodo.7963532</citation> -<!-- <citation type="bibtex"> --> -<!-- @misc{githubChessAnalysisPipeline, --> -<!-- author = {LastTODO, FirstTODO}, --> -<!-- year = {TODO}, --> -<!-- title = {CHAPSAXSWAXSdemo}, --> -<!-- publisher = {GitHub}, --> -<!-- journal = {GitHub repository}, --> -<!-- url = {https://github.com/CHESSComputing/ChessAnalysisPipeline}, --> -<!-- }</citation> --> </citations> </tool>
--- a/saxswaxs/test_1d Tue Jun 20 11:35:00 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,92 +0,0 @@ -#F sample_14_align -#E 1637195555 -#D Wed Nov 17 19:32:35 2021 -#C spec User = chess_id3b - -#O0 mono monz mchi mony monx und_CL s0s s0n -#O1 s0t s0b s0x s0h s0z s0v mirzu mirzd -#O2 mirbu mirbd xu yu zu xd zld zrd -#O3 fpx att mirz mirth s3b s3t s3s s3n -#O4 s3z s3v s3x s3h s1b s1t s1s s1n -#O5 s1z s1v s1x s1h fl1x fl1z fl2x fl2z -#O6 waxx waxz1 waxz2 waxz waxtilt xmirx xmirz xmirphi -#O7 xmirth saxx saxy saxz andy andz zl2 xl2 -#O8 yl2 yr2 zru2 zrd2 xd7 zd7 xu7 zu7 -#O9 bedx_lo icvx icvz air_x p3y p3z nozx nozz -#O10 bedx bedx_galil s2b s2t s2s s2n s2z s2v -#O11 s2x s2h xrfx xrfy xrfz zd5 zru5 zlu5 -#O12 yd5 xd5 xu5 tabx5 zr6 zlu6 zld6 yr6 -#O13 yl6 xr6 th tth phi vtxx txr tyr -#O14 tzr txt tyt tzt txr2 tyr2 tzr2 txt2 -#O15 tyt2 tzt2 txr3 tyr3 tzr3 txt3 tyt3 tzt3 -#O16 txr4 tyr4 tzr4 txt4 tyt4 tzt4 txr5 tyr5 -#O17 tzr5 txt5 tyt5 tzt5 txr6 tyr6 tzr6 txt6 -#O18 tyt6 tzt6 txr7 tyr7 tzr7 txt7 tyt7 tzt7 -#O19 txr8 tyr8 tzr8 txt8 tyt8 tzt8 -#o0 mono monz mchi mony monx und s0s s0n -#o1 s0t s0b s0x s0h s0z s0v mirzu mirzd -#o2 mirbu mirbd xu yu zu xd zld zrd -#o3 fpx att mirz mirth s3b s3t s3s s3n -#o4 s3z s3v s3x s3h s1b s1t s1s s1n -#o5 s1z s1v s1x s1h fl1x fl1z fl2x fl2z -#o6 waxx waxz1 waxz2 waxz waxtilt xmirx xmirz xmirphi -#o7 xmirth saxx saxy saxz andy andz zl2 xl2 -#o8 yl2 yr2 zru2 zrd2 xd7 zd7 xu7 zu7 -#o9 bedx_lo icvx icvz air_x p3y p3z nozx nozz -#o10 bedx bedx_g s2b s2t s2s s2n s2z s2v -#o11 s2x s2h samx samy samz zd5 zru5 zlu5 -#o12 yd5 xd5 xu5 tabx5 zr6 zlu6 zld6 yr6 -#o13 yl6 xr6 th tth phi vtxx txr tyr -#o14 tzr txt tyt tzt txr2 tyr2 tzr2 txt2 -#o15 tyt2 tzt2 txr3 tyr3 tzr3 txt3 tyt3 tabz -#o16 txr4 tyr4 tzr4 txt4 tyt4 tzt4 txr5 tyr5 -#o17 tzr5 txt5 tyt5 tzt5 txr6 tyr6 tzr6 txt6 -#o18 tyt6 tzt6 txr7 tyr7 tzr7 crlx tyt7 crlz -#o19 txr8 tyr8 tzr8 txt8 bedy bedz -#J0 Seconds ic0_ni keyz icv_pos icv_sum tminus sec_2 diode -#J1 ic1 ic3 icv_lo icv_hi mot_pulse p11_r1 -#j0 sec ic0_ni keyz icv_pos icv_sum tminus sec_2 diode -#j1 ic1 ic3 icv_lo icv_hi pulses p11_r1 - - -#S 1 flyscan samx 140.9 141.5 10 0.1 -#D Wed Nov 17 19:35:47 2021 -#T 12 (Seconds) -#G0 0 -#G1 0 -#G3 0 -#G4 0 -#Q -#P0 -3.7830971 3.0011801 -0.22821594 -3.8 13.94 3.69 34.924802 35.874722 -#P1 20.129699 18.629511 35.399834 0.94995949 19.379555 1.5001232 9.3153197 6.2847224 -#P2 7.6113723e-07 -3.039743e-07 3.4829819 1.005207 -9.6873251 -4.7275845 -10.608966 -10.438151 -#P3 -10.972008 544.544 7.8 -3.4595 -0.004199987 0.34579999 1.76 2.1600002 -#P4 0.1708 0.35 1.96 0.4 -1.35 -0.85000006 -0.30000002 0.40000036 -#P5 -1.1 0.5 0.05 0.7 -1.5328934 -20.102657 -8.9922526 -3.4989075 -#P6 11.303603 27.619064 29.211176 28.415 0.796 -3.0517576e-08 0.058524542 3.516674e-09 -#P7 0.49999989 8 1 -6 170 5.1999999 -11.341377 -4.0548513 -#P8 0.91678883 0.91679319 -9.7110746 -7.5862294 1.1553852 -0.19508918 4.0468633 -0.2839906 -#P9 11.900876 0.13366788 2.9005861 -1.2465739 385.49999 70 -13.999995 9.9999998 -#P10 -4.3098231e-06 -174.51549 -1.2799991 -0.37999994 2.8299999 3.5300016 -0.83 0.9 -#P11 3.18 0.7 140.8975 26.999999 141.6 1.0000013 4.0000013 4.0000013 -#P12 6.8038999 -0.59999922 -0.59999922 292 -20.93269 -45.083693 -11.619761 4.6857093e-09 -#P13 1.5745194e-08 -8.0676912 8.5449218e-08 90 0 9.1661255e-07 -1.1665 0.3365 -#P14 11.4515 -0.4805 1.496 -10.1055 4.183 3.7555 0 -2.5 -#P15 -0.815 -9.995 -0.0065 -0.081 -9 14.9515 0.0045 -0.4 -#P16 9.228 -1.1635 -9.65 0.4 -4.3845 1.0185 -2.201 0 -#P17 0 -0.6 8.1215 2.5 55.4955 5.769 0 -4.1045 -#P18 -38.1255 -24.9045 0.234 0.234 7.609 1.2315 0.234 -0.1975 -#P19 -10.2505 -10.2505 -0.6675 -10.2505 0 0 -#N 9 -#L xrfx Seconds sec_2 diode ic1 ic3 icv_lo icv_hi mot_pulse -140.899995 0 0.302713 10898.0 14772.0 29927.0 93811.0 87169.0 0 -140.959995 0 0.100783 3615.0 4910.0 9950.0 30648.0 29072.0 0 -141.019995 0 0.099614 3592.0 4902.0 9951.0 30359.0 28781.0 0 -141.079995 0 0.099614 1264.0 4851.0 9819.0 30288.0 28727.0 0 -141.139995 0 0.099614 877.0 4709.0 9445.0 30411.0 28511.0 0 -141.199995 0 0.100398 631.0 4764.0 9537.0 30308.0 28751.0 0 -141.259995 0 0.100782 542.0 4804.0 9630.0 30359.0 28916.0 0 -141.319995 0 0.099614 625.0 4839.0 9743.0 30425.0 28762.0 0 -141.379995 0 0.099614 542.0 4787.0 9597.0 30298.0 28635.0 0 -141.439995 0 0.099614 665.0 4784.0 9599.0 30283.0 28662.0 0 -141.499995 0 0.146491 1248.0 6957.0 13906.0 44347.0 42023.0 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/saxswaxs/test_scans Tue Jun 20 11:58:39 2023 +0000 @@ -0,0 +1,22 @@ +#F test_scans +#E 1684937343 +#O0 mtr_0 +#o0 mtr_0 +#S 1 ascan mtr_1 -1 1 2 1 +#P0 -1 +#L mtr_1 counter_0 +-1 0.5970827916509526 +0 0.8235129241022665 +1 0.5112369186482792 +#S 2 ascan mtr_1 -1 1 2 1 +#P0 0 +#L mtr_1 counter_0 +-1 0.5993819559229079 +0 0.7377995537968701 +1 0.1865718135324972 +#S 3 ascan mtr_1 -1 1 2 1 +#P0 1 +#L mtr_1 counter_0 +-1 0.9943311654787657 +0 0.07937636730740139 +1 0.021956904524402576 \ No newline at end of file