Mercurial > repos > ximgchess > chap_test_20230411
changeset 164:29e197ae9a80 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit bd55c86b9f7bfabff0bbec1f10704850fec82f02-dirty
| author | ximgchess |
|---|---|
| date | Fri, 30 Jun 2023 16:19:36 +0000 |
| parents | 952a2cf9e629 |
| children | c13ce860645e |
| files | chapbook_demo/chapbook_demo.xml |
| diffstat | 1 files changed, 4 insertions(+), 7 deletions(-) [+] |
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--- a/chapbook_demo/chapbook_demo.xml Fri Jun 30 16:10:34 2023 +0000 +++ b/chapbook_demo/chapbook_demo.xml Fri Jun 30 16:19:36 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy10" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@"> +<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy11" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@"> <macros> <import>../macros.xml</import> </macros> @@ -17,20 +17,17 @@ ## input directory provided by the user #import os.path #set $norm_indir = os.path.normpath(str($indir)) - ln -s '$norm_indir'/* '$__tool_directory__' && + ln -s '$norm_indir/*' . && ## Run the pipeline provided - CHAP --config '$config' && - - ## Unlink the symlinks created previously - find '$__tool_directory__' -type l -exec unlink {} \; + CHAP --config '$config' ]]></command> <environment_variables> <environment_variable name="PYTHONPATH">/home/chess_chapaas/chess/chap/</environment_variable> </environment_variables> <inputs> <param type="data" name="config" format="yaml" label="Pipeline Configuration File" /> - <param type="text" name="indir" label="Input Directory" help="DO NOT include a trailing slash"/> + <param type="text" name="indir" label="Input Directory" /> </inputs> <outputs> <data name="data" format="nex" label="I vs q NeXus Data" />