Mercurial > repos > ximgchess > chap_test_20230411
changeset 147:24113e913212 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit ee1df7ddb8e0942881598b461bbb5bdadbe7400d-dirty
| author | ximgchess |
|---|---|
| date | Mon, 26 Jun 2023 12:54:36 +0000 |
| parents | 7dbd3cf49853 |
| children | cef6aa4b716a |
| files | chapbook_demo/chapbook_demo.xml macros.xml |
| diffstat | 2 files changed, 1 insertions(+), 46 deletions(-) [+] |
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--- a/chapbook_demo/chapbook_demo.xml Mon Jun 26 12:28:16 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,45 +0,0 @@ -<tool id="CHAP_chapbook_demo" name="CHAPbook" version="@TOOL_VERSION@+galaxy1" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@"> - <macros> - <import>../macros.xml</import> - </macros> - <requirements> - <expand macro="chap-requirement" /> - <requirement type="package" version="1.0.1">nexusformat</requirement> - <requirement type="package" version="2023.3.0">pyfai</requirement> - <requirement type="package" version="1.10.7">pydantic</requirement> - </requirements> - <command detect_errors="exit_code"><![CDATA[ - pip --exists-action i install certif-pyspec==1.5.3 && - cd '$indir' && - CHAP --config '$config' -]]></command> - <environment_variables> - <environment_variable name="PYTHONPATH">/home/chess_chapaas/chess/chap/</environment_variable> - </environment_variables> - <inputs> - <param type="data" name="config" format="yaml" label="Pipeline Configuration File" /> - <param type="text" name="indir" label="Input Directory" /> - </inputs> - <outputs> - <data name="data" format="nex" label="Reduced data"/> - <data name="plot" format="png" label="Plot"/> - </outputs> - <tests> - <test> - <param name="config" value="config.yaml"/> - <param name="indir" value="/tmp/"/> - </test> - </tests> - <help><![CDATA[ - CHESS Analysis Pipeline (CHAP): - - To run it on command line you'll use: - CHAP --config CONFIG - - To run it within galaxy you'll only need to upload your - required configuration pipeline and necessary data. - ]]></help> - <citations> - <expand macro="chap-citation" /> - </citations> -</tool>
--- a/macros.xml Mon Jun 26 12:28:16 2023 +0000 +++ b/macros.xml Mon Jun 26 12:54:36 2023 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">0.0.8</token> + <token name="@TOOL_VERSION@">v0.0.9</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.09</token> <token name="@PYTHON_TEMPLATE_VERSION@">3.11</token>