# HG changeset patch # User ximgchess # Date 1681311802 0 # Node ID ec5a7fc248d60b09b59d1441d4aa4f66e6ecf11e # Parent d53ca5ae6e764b4f9bc82c0570e476d03d7b36ff planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit eda217fb0afe5af50380a24b578c668db9c004f4-dirty diff -r d53ca5ae6e76 -r ec5a7fc248d6 tomo/tomo_reduce.xml --- a/tomo/tomo_reduce.xml Wed Apr 12 14:39:31 2023 +0000 +++ b/tomo/tomo_reduce.xml Wed Apr 12 15:03:22 2023 +0000 @@ -6,20 +6,9 @@ reduce.yaml && - #else - cp $input_file setup.nex && - cp $tool_config reduce.yaml && - #end if - CHAP --config - #if str($map.type_selector) == "yaml" - $__tool_directory__/pipeline_reduce_yaml.yaml - #else - $__tool_directory__/pipeline_reduce_nexus.yaml - #end if + pip --exists-action i install --target /nfs/chess/galaxy-dev/var/dependencies/_conda/envs/mulled-v1-11c149728ce3e160bbcd143e6baec7605473b9b3f4d2da41f5e09a0cfb5db23f/lib/python3.10/site-packages certif-pyspec==1.5.3 && + pip --exists-action i install --target /nfs/chess/galaxy-dev/var/dependencies/_conda/envs/mulled-v1-11c149728ce3e160bbcd143e6baec7605473b9b3f4d2da41f5e09a0cfb5db23f/lib/python3.10/site-packages pyfai==2023.3.0 3 && + cp $tool_config reduce.yaml ]]>