# HG changeset patch
# User ximgchess
# Date 1681310192 0
# Node ID b5871d66b24212941f2c99e93f2419c38bf90ee3
# Parent  5d3313dbb8a225266646f51a09dc079577efbc1d
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit eda217fb0afe5af50380a24b578c668db9c004f4-dirty

diff -r 5d3313dbb8a2 -r b5871d66b242 tomo/tomo_reduce.xml
--- a/tomo/tomo_reduce.xml	Wed Apr 12 14:31:08 2023 +0000
+++ b/tomo/tomo_reduce.xml	Wed Apr 12 14:36:32 2023 +0000
@@ -6,20 +6,8 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code">
         <![CDATA[
-        mkdir tomo_reduce_plots;
-        #if str($map.type_selector) == "yaml"
-            cp $input_file map.yaml &&
-            cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml &&
-        #else
-            cp $input_file setup.nex &&
-            cp $tool_config reduce.yaml &&
-        #end if
-        CHAP --config 
-        #if str($map.type_selector) == "yaml"
-            $__tool_directory__/pipeline_reduce_yaml.yaml
-        #else
-            $__tool_directory__/pipeline_reduce_nexus.yaml
-        #end if
+        pip --exists-action i install --target='/nfs/chess/galaxy-dev/var/dependencies/_conda/envs' pyfai==2023.3.0
+        cp $tool_config reduce.yaml
         ]]>
     </command>
     <configfiles>