# HG changeset patch
# User ximgchess
# Date 1681295525 0
# Node ID 39bdb54c661d8f0ca7939eab559503f7afd6c107
# Parent  47a0648cdfd146a5e9f0bcb3699284fa9221ad1b
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 3e8c1c54d5e12fdbc4f6c5cdae88b6d054db7c45-dirty

diff -r 47a0648cdfd1 -r 39bdb54c661d tomo/.tomo_reduce.xml.swp
Binary file tomo/.tomo_reduce.xml.swp has changed
diff -r 47a0648cdfd1 -r 39bdb54c661d tomo/tomo_reduce.xml
--- a/tomo/tomo_reduce.xml	Wed Apr 12 10:28:06 2023 +0000
+++ b/tomo/tomo_reduce.xml	Wed Apr 12 10:32:05 2023 +0000
@@ -6,7 +6,7 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code">
         <![CDATA[
-            cp '$input_file' output.yaml
+            cat reduce.yaml
         ]]>
     </command>
     <configfiles>
@@ -62,6 +62,7 @@
         </conditional>
     </inputs>
     <outputs>
+        <data name="tool_config" format="yaml" label="Tool config" from_work_dir="reduce.yaml" hidden="false"/>
         <!--
         <data name="tool_config" format="yaml" label="Tool config" from_work_dir="reduce.yaml" hidden="false"/>
         <collection name="tomo_reduce_plots" type="list" label="Data reduction images">
@@ -69,7 +70,6 @@
         </collection>
         <data name="output_file" format="nex" label="Reduced tomography data" from_work_dir="output.nex"/>
         -->
-        <data name="output_file" format="yaml" label="Test output" from_work_dir="output.yaml"/>
     </outputs>
     <help>
         <![CDATA[