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view saxswaxs/pipeline.yaml @ 72:efb4a65f46eb draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
author ximgchess
date Mon, 24 Apr 2023 19:49:26 +0000
parents 3b1dbe3fb91b
children c63315c31cef
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pipeline:

  # Download example data
  - common.URLReader:
      url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/saxswaxs%2frawdata_test_1d.tar/raw?ref=main
      headers:
        PRIVATE-TOKEN: # your token here
  - common.URLResponseProcessor
  - common.ExtractArchiveWriter:
      filename: .

  # Collect map data
  - common.YAMLReader:
      filename: map.yaml
      schema: MapConfig
  - common.MapProcessor
  - common.NexusWriter:
      filename: map_specdata.nxs
      force_overwrite: true

  # Integrate map detetcor data
  - common.MultipleReader:
      readers:
        - YAMLReader:
            filename: map.yaml
            schema: MapConfig
        - YAMLReader:
            filename: integration.yaml
            schema: IntegrationConfig
  - common.IntegrateMapProcessor
  - common.NexusWriter:
      filename: map_reduceddata.nxs
      force_overwrite: true