Mercurial > repos > ximgchess > chap_test_20230411

view tomo/pipeline_reconstruct.yaml @ 78:d0bc5f9dc4c9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 64d735e72badb6466fcf32843328300887a4a46e-dirty
author ximgchess
date Thu, 27 Apr 2023 11:01:04 +0000
parents dedb67bd8d6e
children 72608a06dd7f
line wrap: on
line source

pipeline:

  # Reconstruct tomography stacks
  - common.MultipleReader:
      readers:
        - NexusReader:
            filename: reduced.nex
        - YAMLReader:
            filename: reconstruct.yaml
            schema: TomoReconstructConfig
        - YAMLReader:
            filename: centers.yaml
            schema: TomoFindCenterConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reconstruct_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true