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view tomo/pipeline_reconstruct.yaml @ 93:c63315c31cef draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7
author ximgchess
date Wed, 24 May 2023 14:33:59 +0000
parents 72608a06dd7f
children 3283cbddcc1d
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pipeline:

  # Reconstruct tomography stacks
  - common.MultipleReader:
      readers:
        - NexusReader:
            filename: reduced.nex
        - YAMLReader:
            filename: reconstruct.yaml
            schema: TomoReconstructConfig
        - YAMLReader:
            filename: centers.yaml
            schema: TomoFindCenterConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reconstruct_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true