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view tomo/pipeline_combine.yaml @ 69:c1aed65c1d24 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
author ximgchess
date Mon, 24 Apr 2023 19:28:57 +0000
parents 3b1dbe3fb91b
children dedb67bd8d6e
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pipeline:

  # Combine tomography stacks
  - common.MultipleReader:
      readers:
        - NexusReader:
            filename: reconstructed.nxs
        - YAMLReader:
            filename: combine.yaml
            schema: TomoCombineConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_combine_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nxs
      force_overwrite: true