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view tomo/pipeline_combine.yaml @ 133:49985da419b8 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
author ximgchess
date Tue, 20 Jun 2023 12:45:50 +0000
parents b67b9979ff74
children
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pipeline:

  # Combine tomography stacks
  - pipeline.MultiplePipelineItem:
      items:
        - common.NexusReader:
            filename: reconstructed.nex
        - common.YAMLReader:
            filename: combine.yaml
            schema: TomoCombineConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_combine_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true