view tomo/pipeline_reconstruct.yaml @ 151:45279ea54823 draft

planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit d90f34d89c6cb4bc508a4ef506fb55fe38b873ec-dirty
author ximgchess
date Wed, 28 Jun 2023 18:59:17 +0000
parents b67b9979ff74
children
line wrap: on
line source

pipeline:

  # Reconstruct tomography stacks
  - pipeline.MultiplePipelineItem:
      items:
        - common.NexusReader:
            filename: reduced.nex
        - common.YAMLReader:
            filename: reconstruct.yaml
            schema: TomoReconstructConfig
        - common.YAMLReader:
            filename: centers.yaml
            schema: TomoFindCenterConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reconstruct_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true