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view tomo/pipeline_reconstruct.yaml @ 149:3b4cd4e35b3a draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 743573b7be16eb3a159ec0affb43ea370cc190f6-dirty
author ximgchess
date Tue, 27 Jun 2023 12:12:03 +0000
parents b67b9979ff74
children
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pipeline:

  # Reconstruct tomography stacks
  - pipeline.MultiplePipelineItem:
      items:
        - common.NexusReader:
            filename: reduced.nex
        - common.YAMLReader:
            filename: reconstruct.yaml
            schema: TomoReconstructConfig
        - common.YAMLReader:
            filename: centers.yaml
            schema: TomoFindCenterConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reconstruct_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true