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view tomo/pipeline_reduce_nexus.yaml @ 147:24113e913212 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit ee1df7ddb8e0942881598b461bbb5bdadbe7400d-dirty
author ximgchess
date Mon, 26 Jun 2023 12:54:36 +0000
parents b67b9979ff74
children
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pipeline:

  # Reduce tomography images
  - pipeline.MultiplePipelineItem:
      items:
        - common.NexusReader:
            filename: setup.nex
        - common.YAMLReader:
            filename: reduce.yaml
            schema: TomoReduceConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reduce_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true