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view tomo/pipeline_reduce_yaml.yaml @ 64:17b9b4ec475b draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit c49c98aa168b9bb4c31c5e447712dfb9942572f6-dirty
author ximgchess
date Thu, 13 Apr 2023 13:05:09 +0000
parents 2679014bb6eb
children 72608a06dd7f
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pipeline:

  # Reduce tomography images
  - common.MultipleReader:
      readers:
        - YAMLReader:
            filename: map.yaml
            schema: MapConfig
        - YAMLReader:
            filename: reduce.yaml
            schema: TomoReduceConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reduce_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true