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view tomo/pipeline_reduce_nexus.yaml @ 92:142f73036013 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 01388c69776c82e48e84676a3d17d4623f5e08bd-dirty
author ximgchess
date Wed, 24 May 2023 13:55:45 +0000
parents 72608a06dd7f
children c63315c31cef
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pipeline:

  # Reduce tomography images
  - pipeline.MultiplePipelineItem:
      items:
        - common.NexusReader:
            filename: setup.nex
        - common.YAMLReader:
            filename: reduce.yaml
            schema: TomoReduceConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reduce_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true