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view tomo/pipeline_reconstruct.yaml @ 128:0823bbfb0a78 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit dfe15e79689bca8ddcd843f9cf47eff29f6ee2e4
author ximgchess
date Thu, 15 Jun 2023 19:21:58 +0000
parents b67b9979ff74
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pipeline:

  # Reconstruct tomography stacks
  - pipeline.MultiplePipelineItem:
      items:
        - common.NexusReader:
            filename: reduced.nex
        - common.YAMLReader:
            filename: reconstruct.yaml
            schema: TomoReconstructConfig
        - common.YAMLReader:
            filename: centers.yaml
            schema: TomoFindCenterConfig
  - tomo.TomoDataProcessor:
      output_folder: tomo_reconstruct_plots
      save_figs: 'only'
  - common.NexusWriter:
      filename: output.nex
      force_overwrite: true