Mercurial > repos > ximgchess > chap_test_20230411

diff tomo/pipeline_reconstruct.yaml @ 66:3b1dbe3fb91b draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
author ximgchess
date Mon, 24 Apr 2023 16:39:59 +0000
parents
children dedb67bd8d6e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tomo/pipeline_reconstruct.yaml	Mon Apr 24 16:39:59 2023 +0000
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+pipeline:
+
+  # Reconstruct tomography stacks
+  - common.MultipleReader:
+      readers:
+        - NexusReader:
+            filename: reduced.nxs
+        - YAMLReader:
+            filename: reconstruct.yaml
+            schema: TomoReconstructConfig
+        - YAMLReader:
+            filename: centers.yaml
+            schema: TomoFindCenterConfig
+  - tomo.TomoDataProcessor:
+      output_folder: tomo_reconstruct_plots
+      save_figs: 'only'
+  - common.NexusWriter:
+      filename: output.nxs
+      force_overwrite: true