Mercurial > repos > ximgchess > chap_test_20230411
comparison tomo/pipeline_reconstruct.yaml @ 74:dedb67bd8d6e draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
| author | ximgchess |
|---|---|
| date | Mon, 24 Apr 2023 19:58:22 +0000 |
| parents | 3b1dbe3fb91b |
| children | 72608a06dd7f |
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| 73:0476dee34886 | 74:dedb67bd8d6e |
|---|---|
| 2 | 2 |
| 3 # Reconstruct tomography stacks | 3 # Reconstruct tomography stacks |
| 4 - common.MultipleReader: | 4 - common.MultipleReader: |
| 5 readers: | 5 readers: |
| 6 - NexusReader: | 6 - NexusReader: |
| 7 filename: reduced.nxs | 7 filename: reduced.nex |
| 8 - YAMLReader: | 8 - YAMLReader: |
| 9 filename: reconstruct.yaml | 9 filename: reconstruct.yaml |
| 10 schema: TomoReconstructConfig | 10 schema: TomoReconstructConfig |
| 11 - YAMLReader: | 11 - YAMLReader: |
| 12 filename: centers.yaml | 12 filename: centers.yaml |
| 13 schema: TomoFindCenterConfig | 13 schema: TomoFindCenterConfig |
| 14 - tomo.TomoDataProcessor: | 14 - tomo.TomoDataProcessor: |
| 15 output_folder: tomo_reconstruct_plots | 15 output_folder: tomo_reconstruct_plots |
| 16 save_figs: 'only' | 16 save_figs: 'only' |
| 17 - common.NexusWriter: | 17 - common.NexusWriter: |
| 18 filename: output.nxs | 18 filename: output.nex |
| 19 force_overwrite: true | 19 force_overwrite: true |