Mercurial > repos > ximgchess > chap_test_20230411

comparison tomo/tomo_reduce.xml @ 86:dadfe8bcbc0d draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 68cb427ae89554b84bb7eb9f1ff9ab1497539208-dirty
author ximgchess
date Fri, 19 May 2023 10:19:00 +0000
parents d58f090c7073
children 61ed115162c1
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equal deleted inserted replaced
85:d58f090c7073 86:dadfe8bcbc0d
4 <import>tomo_macros.xml</import> 4 <import>tomo_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <command detect_errors="exit_code"> 7 <command detect_errors="exit_code">
8 <![CDATA[ 8 <![CDATA[
9 export PYTHONPATH=$PWD/.local/lib/python3.11/site-packages:$PYTHONPATH &&
10 mkdir tomo_reduce_plots && 9 mkdir tomo_reduce_plots &&
11 #if str($map.type_selector) == "yaml" 10 #if str($map.type_selector) == "yaml"
12 cp $input_file map.yaml && 11 cp $input_file map.yaml &&
13 cat $__tool_directory__/$map.detector.type_selector $tool_config > reduce.yaml && 12 cat $__tool_directory__/$map.detector.type_selector $tool_config > reduce.yaml &&
14 #else 13 #else