comparison tomo/tomo_reduce.xml @ 76:da8f5ae271ea draft

planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 64d735e72badb6466fcf32843328300887a4a46e

75:15f06d8e188d

        <![CDATA[
        mkdir tomo_reduce_plots;
        $__tool_directory__/../pip_install.sh 'certif-pyspec==1.5.3' &&
        #if str($map.type_selector) == "yaml"
            cp $input_file map.yaml &&
            cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml &&
        #else
            cp $input_file setup.nex &&
            cp $tool_config reduce.yaml &&
        #end if
        CHAP --config 

            </param>
            <when value="yaml">
                <param name="input_file" type="data" format="yaml" optional="false" label="Map config file"/>
                <conditional name="detector">
                    <param name="type_selector" type="select" display="radio" label="Choose detector prefix">
                        <option value="andor2">andor2</option>
                        <option value="manta">manta</option>
                        <option value="retiga">retiga</option>
                    </param>
                    <when value="andor2"/>
                    <when value="manta"/>
                    <when value="retiga"/>
                </conditional>

76:da8f5ae271ea

        <![CDATA[
        mkdir tomo_reduce_plots;
        $__tool_directory__/../pip_install.sh 'certif-pyspec==1.5.3' &&
        #if str($map.type_selector) == "yaml"
            cp $input_file map.yaml &&
            cat $__tool_directory__/$map.type_selector.detector.type_selector $tool_config > reduce.yaml &&
        #else
            cp $input_file setup.nex &&
            cp $tool_config reduce.yaml &&
        #end if
        CHAP --config 

            </param>
            <when value="yaml">
                <param name="input_file" type="data" format="yaml" optional="false" label="Map config file"/>
                <conditional name="detector">
                    <param name="type_selector" type="select" display="radio" label="Choose detector prefix">
                        <option value="andor2">andor2.yaml</option>
                        <option value="manta">manta.yaml</option>
                        <option value="retiga">retiga.yaml</option>
                    </param>
                    <when value="andor2"/>
                    <when value="manta"/>
                    <when value="retiga"/>
                </conditional>