Mercurial > repos > ximgchess > chap_test_20230411
comparison saxswaxs/pipeline.yaml @ 126:ca285a3cc30b draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit e77d79bf9a41af058415953e35d20a42e014d90a
| author | ximgchess |
|---|---|
| date | Tue, 30 May 2023 18:03:00 +0000 |
| parents | 4205395a6091 |
| children | d8baf7dafbd8 |
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| 125:1d40ef04d7ec | 126:ca285a3cc30b |
|---|---|
| 1 pipeline: | 1 pipeline: |
| 2 | 2 |
| 3 # Download example data | |
| 4 - common.URLReader: | |
| 5 url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/saxswaxs%2frawdata_test_1d.tar/raw?ref=main | |
| 6 headers: | |
| 7 PRIVATE-TOKEN: # your token here | |
| 8 - common.URLResponseProcessor | |
| 9 - common.ExtractArchiveWriter: | |
| 10 filename: . | |
| 11 | |
| 12 # Collect map data | |
| 13 - common.YAMLReader: | |
| 14 filename: map.yaml | |
| 15 schema: MapConfig | |
| 16 - common.MapProcessor | |
| 17 - common.NexusWriter: | |
| 18 filename: map_specdata.nxs | |
| 19 force_overwrite: true | |
| 20 | |
| 21 # Integrate map detetcor data | 3 # Integrate map detetcor data |
| 22 - common.MultipleReader: | 4 - pipeline.MultiplePipelineItem: |
| 23 readers: | 5 items: |
| 24 - YAMLReader: | 6 - common.YAMLReader: |
| 25 filename: map.yaml | 7 filename: map.yaml |
| 26 schema: MapConfig | 8 schema: MapConfig |
| 27 - YAMLReader: | 9 - common.YAMLReader: |
| 28 filename: integration.yaml | 10 filename: integration.yaml |
| 29 schema: IntegrationConfig | 11 schema: IntegrationConfig |
| 30 - common.IntegrateMapProcessor | 12 - common.IntegrateMapProcessor |
| 31 - common.NexusWriter: | 13 - common.NexusWriter: |
| 32 filename: map_reduceddata.nxs | 14 filename: map_reduceddata.nxs |