Mercurial > repos > ximgchess > chap_test_20230411
comparison tomo/pipeline_reconstruct.yaml @ 103:b67b9979ff74 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 01388c69776c82e48e84676a3d17d4623f5e08bd-dirty
| author | ximgchess |
|---|---|
| date | Wed, 24 May 2023 18:17:09 +0000 |
| parents | f71e55577c95 |
| children |
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| 102:f71e55577c95 | 103:b67b9979ff74 |
|---|---|
| 1 pipeline: | 1 pipeline: |
| 2 | 2 |
| 3 # Reconstruct tomography stacks | 3 # Reconstruct tomography stacks |
| 4 - common.MultipleReader: | 4 - pipeline.MultiplePipelineItem: |
| 5 readers: | 5 items: |
| 6 - NexusReader: | 6 - common.NexusReader: |
| 7 filename: reduced.nex | 7 filename: reduced.nex |
| 8 - YAMLReader: | 8 - common.YAMLReader: |
| 9 filename: reconstruct.yaml | 9 filename: reconstruct.yaml |
| 10 schema: TomoReconstructConfig | 10 schema: TomoReconstructConfig |
| 11 - YAMLReader: | 11 - common.YAMLReader: |
| 12 filename: centers.yaml | 12 filename: centers.yaml |
| 13 schema: TomoFindCenterConfig | 13 schema: TomoFindCenterConfig |
| 14 - tomo.TomoDataProcessor: | 14 - tomo.TomoDataProcessor: |
| 15 output_folder: tomo_reconstruct_plots | 15 output_folder: tomo_reconstruct_plots |
| 16 save_figs: 'only' | 16 save_figs: 'only' |