Mercurial > repos > ximgchess > chap_test_20230411
comparison tomo/tomo_reduce.xml @ 25:99598d07fe7f draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 3e8c1c54d5e12fdbc4f6c5cdae88b6d054db7c45-dirty
| author | ximgchess |
|---|---|
| date | Wed, 12 Apr 2023 11:35:18 +0000 |
| parents | 0fc368bffc0f |
| children | eb4a2cf5e7a8 |
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| 24:0fc368bffc0f | 25:99598d07fe7f |
|---|---|
| 3 <macros> | 3 <macros> |
| 4 <import>tomo_macros.xml</import> | 4 <import>tomo_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <command detect_errors="exit_code"> | 7 <command detect_errors="exit_code"> |
| 8 <![CDATA[#slurp | 8 <![CDATA[ |
| 9 #if str($map.type_selector) == "yaml" | 9 #if str($map.type_selector) == "yaml" |
| 10 cp $input_file map.yaml && | 10 cp $input_file map.yaml && |
| 11 cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml && | 11 cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml && |
| 12 #else | 12 #else |
| 13 cp $input_file setup.nex && | 13 cp $input_file setup.nex && |
| 17 ]]> | 17 ]]> |
| 18 </command> | 18 </command> |
| 19 <configfiles> | 19 <configfiles> |
| 20 <configfile name="tool_config"> | 20 <configfile name="tool_config"> |
| 21 <![CDATA[#slurp | 21 <![CDATA[#slurp |
| 22 #if str($map.type_selector) == "yaml" | |
| 23 cat $__tool_directory__/andor2.yaml | |
| 24 #end if | |
| 22 #echo 'img_x_bounds:' # | 25 #echo 'img_x_bounds:' # |
| 23 #if str($img_x_bounds.type_selector) == "full_range" | 26 #if str($img_x_bounds.type_selector) == "full_range" |
| 24 #echo '- -1' # | 27 #echo '- -1' # |
| 25 #echo '- -1' # | 28 #echo '- -1' # |
| 26 #else | 29 #else |