Mercurial > repos > ximgchess > chap_test_20230411
comparison saxswaxs/pipeline.yaml @ 104:5d0c96f9c0ff draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 6697892ecc504b00077394d0c167431ec3ac12f7-dirty
| author | ximgchess |
|---|---|
| date | Thu, 25 May 2023 12:44:16 +0000 |
| parents | b67b9979ff74 |
| children | 4205395a6091 |
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| 103:b67b9979ff74 | 104:5d0c96f9c0ff |
|---|---|
| 1 pipeline: | 1 pipeline: |
| 2 | |
| 3 # Download example data | |
| 4 - common.URLReader: | |
| 5 url: https://gitlab01.classe.cornell.edu/api/v4/projects/308/repository/files/saxswaxs%2frawdata_test_1d.tar/raw?ref=main | |
| 6 headers: | |
| 7 PRIVATE-TOKEN: # your token here | |
| 8 - common.URLResponseProcessor | |
| 9 - common.ExtractArchiveWriter: | |
| 10 filename: . | |
| 11 | 2 |
| 12 # Collect map data | 3 # Collect map data |
| 13 - common.YAMLReader: | 4 - common.YAMLReader: |
| 14 filename: map.yaml | 5 filename: map.yaml |
| 15 schema: MapConfig | 6 schema: MapConfig |
| 17 - common.NexusWriter: | 8 - common.NexusWriter: |
| 18 filename: map_specdata.nxs | 9 filename: map_specdata.nxs |
| 19 force_overwrite: true | 10 force_overwrite: true |
| 20 | 11 |
| 21 # Integrate map detetcor data | 12 # Integrate map detetcor data |
| 22 - common.MultipleReader: | 13 - pipeline.MultiplePipelineItem: |
| 23 readers: | 14 items: |
| 24 - YAMLReader: | 15 - common.YAMLReader: |
| 25 filename: map.yaml | 16 filename: map.yaml |
| 26 schema: MapConfig | 17 schema: MapConfig |
| 27 - YAMLReader: | 18 - common.YAMLReader: |
| 28 filename: integration.yaml | 19 filename: integration.yaml |
| 29 schema: IntegrationConfig | 20 schema: IntegrationConfig |
| 30 - common.IntegrateMapProcessor | 21 - common.IntegrateMapProcessor |
| 31 - common.NexusWriter: | 22 - common.NexusWriter: |
| 32 filename: map_reduceddata.nxs | 23 filename: map_reduceddata.nxs |