Mercurial > repos > ximgchess > chap_test_20230411
comparison tomo/tomo_reduce.xml @ 13:5a9ee90cbc1e draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 3e8c1c54d5e12fdbc4f6c5cdae88b6d054db7c45-dirty
| author | ximgchess |
|---|---|
| date | Wed, 12 Apr 2023 10:58:39 +0000 |
| parents | a0fd4c4e1139 |
| children | 48ca4aca043a |
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| 12:a0fd4c4e1139 | 13:5a9ee90cbc1e |
|---|---|
| 15 <![CDATA[#slurp | 15 <![CDATA[#slurp |
| 16 #if str($map.type_selector) == "YAML" | 16 #if str($map.type_selector) == "YAML" |
| 17 #cat andor2.yaml | 17 #cat andor2.yaml |
| 18 #end if | 18 #end if |
| 19 #echo 'img_x_bounds:' # | 19 #echo 'img_x_bounds:' # |
| 20 #echo str($img_x_bounds.type_selector) # | |
| 20 #if str($img_x_bounds.type_selector) == "full_range" | 21 #if str($img_x_bounds.type_selector) == "full_range" |
| 21 #echo '- -1' # | 22 #echo '- -1' # |
| 22 #echo '- -1' # | 23 #echo '- -1' # |
| 23 #else | 24 #else |
| 24 #echo '- ' + str($img_x_bounds.low) | 25 #echo '- ' + str($img_x_bounds.low) # |
| 25 #echo '- ' + str($img_x_bounds.upp) | 26 #echo '- ' + str($img_x_bounds.upp) # |
| 26 #end if | 27 #end if |
| 27 ]]> | 28 ]]> |
| 28 </configfile> | 29 </configfile> |
| 29 </configfiles> | 30 </configfiles> |
| 30 <inputs> | 31 <inputs> |
| 68 <collection name="tomo_reduce_plots" type="list" label="Data reduction images"> | 69 <collection name="tomo_reduce_plots" type="list" label="Data reduction images"> |
| 69 <discover_datasets pattern="__name_and_ext__" directory="tomo_reduce_plots"/> | 70 <discover_datasets pattern="__name_and_ext__" directory="tomo_reduce_plots"/> |
| 70 </collection> | 71 </collection> |
| 71 <data name="output_file" format="nex" label="Reduced tomography data" from_work_dir="output.nex"/> | 72 <data name="output_file" format="nex" label="Reduced tomography data" from_work_dir="output.nex"/> |
| 72 --> | 73 --> |
| 74 <data name="output_file" format="yaml" label="Output" from_work_dir="reduce.yaml"/> | |
| 73 </outputs> | 75 </outputs> |
| 74 <help> | 76 <help> |
| 75 <![CDATA[ | 77 <![CDATA[ |
| 76 usage: PROG [-h] [--config CONFIG] [--verbose] | 78 usage: PROG [-h] [--config CONFIG] [--verbose] |
| 77 | 79 |