Mercurial > repos > ximgchess > chap_test_20230411
comparison tomo/pipeline_reconstruct.yaml @ 66:3b1dbe3fb91b draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
| author | ximgchess |
|---|---|
| date | Mon, 24 Apr 2023 16:39:59 +0000 |
| parents | |
| children | dedb67bd8d6e |
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| 65:3af7a69bd3d6 | 66:3b1dbe3fb91b |
|---|---|
| 1 pipeline: | |
| 2 | |
| 3 # Reconstruct tomography stacks | |
| 4 - common.MultipleReader: | |
| 5 readers: | |
| 6 - NexusReader: | |
| 7 filename: reduced.nxs | |
| 8 - YAMLReader: | |
| 9 filename: reconstruct.yaml | |
| 10 schema: TomoReconstructConfig | |
| 11 - YAMLReader: | |
| 12 filename: centers.yaml | |
| 13 schema: TomoFindCenterConfig | |
| 14 - tomo.TomoDataProcessor: | |
| 15 output_folder: tomo_reconstruct_plots | |
| 16 save_figs: 'only' | |
| 17 - common.NexusWriter: | |
| 18 filename: output.nxs | |
| 19 force_overwrite: true |