Mercurial > repos > ximgchess > chap_test_20230411
comparison tomo/tomo_reduce.xml @ 9:2ff8120ca4d4 draft
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 3e8c1c54d5e12fdbc4f6c5cdae88b6d054db7c45-dirty
| author | ximgchess |
|---|---|
| date | Wed, 12 Apr 2023 10:45:37 +0000 |
| parents | 6fef0a9adcf1 |
| children | 7776e1e73c56 |
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| 8:6fef0a9adcf1 | 9:2ff8120ca4d4 |
|---|---|
| 12 </command> | 12 </command> |
| 13 <configfiles> | 13 <configfiles> |
| 14 <configfile name="tool_config"> | 14 <configfile name="tool_config"> |
| 15 <![CDATA[#slurp | 15 <![CDATA[#slurp |
| 16 #if str($map.type_selector) == "YAML" | 16 #if str($map.type_selector) == "YAML" |
| 17 #cat andor2.yaml | 17 cat andor2.yaml |
| 18 #end if | 18 #end if |
| 19 #echo 'img_x_bounds:' # | 19 #echo 'img_x_bounds:' # |
| 20 #if str($img_x_bounds.type_selector) == "full_range" | 20 #if str($img_x_bounds.type_selector) == "full_range" |
| 21 #echo '- -1' | 21 #echo '- -1' # |
| 22 #echo '- -1' | 22 #echo '- -1' # |
| 23 #else | 23 #else |
| 24 #echo '- ' + str($img_x_bounds.low) | 24 #echo '- ' + str($img_x_bounds.low) |
| 25 #echo '- ' + str($img_x_bounds.upp) | 25 #echo '- ' + str($img_x_bounds.upp) |
| 26 #end if | 26 #end if |
| 27 ]]> | 27 ]]> |
| 61 <param name="upp" type="integer" value="-1" optional="false" label="Upper image range index"/> | 61 <param name="upp" type="integer" value="-1" optional="false" label="Upper image range index"/> |
| 62 </when> | 62 </when> |
| 63 </conditional> | 63 </conditional> |
| 64 </inputs> | 64 </inputs> |
| 65 <outputs> | 65 <outputs> |
| 66 <data name="tool_config" format="yaml" label="Tool config" from_work_dir="reduce.yaml" hidden="false"/> | |
| 66 <!-- | 67 <!-- |
| 67 <data name="tool_config" format="yaml" label="Tool config" from_work_dir="reduce.yaml" hidden="false"/> | |
| 68 <collection name="tomo_reduce_plots" type="list" label="Data reduction images"> | 68 <collection name="tomo_reduce_plots" type="list" label="Data reduction images"> |
| 69 <discover_datasets pattern="__name_and_ext__" directory="tomo_reduce_plots"/> | 69 <discover_datasets pattern="__name_and_ext__" directory="tomo_reduce_plots"/> |
| 70 </collection> | 70 </collection> |
| 71 <data name="output_file" format="nex" label="Reduced tomography data" from_work_dir="output.nex"/> | 71 <data name="output_file" format="nex" label="Reduced tomography data" from_work_dir="output.nex"/> |
| 72 --> | 72 --> |