Mercurial > repos > ximgchess > chap_test_20230411

comparison tomo/tomo_reconstruct.xml @ 71:0473fdc7f9b0 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
author ximgchess
date Mon, 24 Apr 2023 19:48:29 +0000
parents 3b1dbe3fb91b
children efb4a65f46eb
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70:54d0adb79293 71:0473fdc7f9b0
8 <![CDATA[ 8 <![CDATA[
9 mkdir tomo_reconstruct_plots; 9 mkdir tomo_reconstruct_plots;
10 $__tool_directory__/../pip_install.sh 'certif-pyspec==1.5.3' && 10 $__tool_directory__/../pip_install.sh 'certif-pyspec==1.5.3' &&
11 cp $input_file reduced.nex && 11 cp $input_file reduced.nex &&
12 cp $center_file centers.yaml && 12 cp $center_file centers.yaml &&
13 cp $tool_config reconstruct.yaml 13 cp $tool_config reconstruct.yaml &&
14 CHAP --config 14 CHAP --config
15 $__tool_directory__/pipeline_reconstruct.yaml 15 $__tool_directory__/pipeline_reconstruct.yaml
16 ]]> 16 ]]>
17 </command> 17 </command>
18 <configfiles> 18 <configfiles>