Mercurial > repos > ximgchess > chap_test_20230411

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 509f8f9b035d9dc3f4878cea2d14769819fe2349-dirty
author ximgchess
date Wed, 23 Aug 2023 18:33:28 +0000
parents 807ef54fdc76
children
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807ef54fdc76 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 819e366e63ba35d3f50f8fc2bd163ce60293b59c-dirty
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1 <tool id="CHAP_test" name="CHESS Analysis Pipeline" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="@PYTHON_TEMPLATE_VERSION@" profile="@PROFILE@">
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2 <macros>
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3 <import>../macros.xml</import>
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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4 </macros>
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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5 <requirements>
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6 <expand macro="chap-requirement" />
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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7 </requirements>
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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8 <command detect_errors="exit_code"><![CDATA[
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9 cp '$input' data.csv &&
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10 CHAP --config '$config' &&
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11 ]]></command>
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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12 <inputs>
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13 <param type="data" name="config" format="yaml" />
807ef54fdc76 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 819e366e63ba35d3f50f8fc2bd163ce60293b59c-dirty
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14 <param type="data" name="input" format="csv" />
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15 </inputs>
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16 <outputs>
807ef54fdc76 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 819e366e63ba35d3f50f8fc2bd163ce60293b59c-dirty
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17 <data name="output" format="json" />
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18 </outputs>
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19 <tests>
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20 <test>
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21 <param name="config" value="config.yaml"/>
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22 <param name="input" value="data.csv"/>
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23 </test>
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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parents: 128
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24 </tests>
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25 <help><![CDATA[
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26 CHESS Analysis Pipeline (CHAP):
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27
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28 To run it on command line you'll use:
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29 CHAP --config CONFIG
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31 To run it within galaxy you'll only need to upload your
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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32 required configuration pipeline and necessary data.
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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33 ]]></help>
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34 <citations>
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35 <expand macro="chap-citation" />
49985da419b8 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 85285b9b70eaf7c5db051ed50b000339023ccdf2-dirty
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36 </citations>
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37 </tool>