Mercurial > repos > ximgchess > chap_test_20230411

annotate tomo/pipeline_combine.yaml @ 87:61ed115162c1 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 68cb427ae89554b84bb7eb9f1ff9ab1497539208-dirty
author ximgchess
date Fri, 19 May 2023 10:22:08 +0000
parents dedb67bd8d6e
children 72608a06dd7f
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3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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1 pipeline:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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3 # Combine tomography stacks
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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4 - common.MultipleReader:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
5 readers:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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6 - NexusReader:
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dedb67bd8d6e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
ximgchess
parents: 66
diff changeset
7 filename: reconstructed.nex
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3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
8 - YAMLReader:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
9 filename: combine.yaml
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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10 schema: TomoCombineConfig
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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11 - tomo.TomoDataProcessor:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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12 output_folder: tomo_combine_plots
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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13 save_figs: 'only'
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
14 - common.NexusWriter:
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dedb67bd8d6e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
ximgchess
parents: 66
diff changeset
15 filename: output.nex
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3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
16 force_overwrite: true