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comparison bcftools_merge.xml @ 24:73e23f3ff1f3 draft

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author wrtz
date Fri, 15 Jan 2016 11:48:02 -0500
parents 3ebaa7bd2773
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23:364f800a211a 24:73e23f3ff1f3
1 <tool id="bcftools_merge" name="BCFtools merge" version="1.0.0"> 1 <tool id="bcftools_merge" name="BCFtools merge" version="1.0.0">
2 <description>Merge multiple VCF/BCF files</description> 2 <description>Merge multiple VCF/BCF files</description>
3 <requirements>
4 <requirement type="package" version="1.3">bcftools</requirement>
5 </requirements>
3 <command> 6 <command>
4 #for $i, $inp in enumerate( $inputs ): 7 #for $i, $inp in enumerate( $inputs ):
5 #if str( $inp.input_file_index ) != "None": 8 #if str( $inp.input_file_index ) != "None":
6 ln -s -f "${inp.input}" "input_file_${i}.${inp.input.ext}" &amp;&amp; 9 ln -s -f "${inp.input}" "input_file_${i}.${inp.input.ext}" &amp;&amp;
7 ln -s -f "${inp.input_file_index}" "input_file_${i}.${inp.input.ext}.tbi" &amp;&amp; 10 ln -s -f "${inp.input_file_index}" "input_file_${i}.${inp.input.ext}.tbi" &amp;&amp;