Mercurial > repos > wolma > rnastar_index_builder
view data_manager/rna_star_index_builder.py @ 1:6127cd38980b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 056ae20332ed001ad50a7e733df3595108172c6c-dirty
author | wolma |
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date | Mon, 24 Jun 2019 11:36:07 -0400 |
parents | |
children | 039890bdcb62 |
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#!/usr/bin/env python import argparse import json def main(): parser = argparse.ArgumentParser() parser.add_argument( '--config-file' ) parser.add_argument( '--value' ) parser.add_argument( '--dbkey' ) parser.add_argument( '--name' ) parser.add_argument( '--subdir' ) parser.add_argument( '--data-table' ) parser.add_argument( '--with-gene-model', action='store_true' ) parser.add_argument( '--index-version' ) args = parser.parse_args() if args.dbkey in [ None, '', '?' ]: raise Exception( '"%s" is not a valid dbkey. You must specify a valid dbkey.' % ( args.dbkey ) ) with_gene_model = "0" if args.with_gene_model: with_gene_model = "1" data_manager_dict = {'data_tables': {args.data_table: [dict({"value": args.value, "dbkey": args.dbkey, "name": args.name, "path": args.subdir, "with_gene_model": with_gene_model, "version": args.index_version} )]}} open( args.config_file, 'w' ).write( json.dumps( data_manager_dict ) ) if __name__ == "__main__": main()