diff fileinfo.xml @ 3:d6ec32ce882b draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fileinfo.xml	Tue Mar 28 04:34:04 2017 -0400
@@ -0,0 +1,38 @@
+<tool id="fileinfo" name="Retrieve File Information" version="0.1.7.3">
+  <description>for supported data formats.</description>
+  <macros>
+    <import>toolshed_macros.xml</import>
+  </macros>
+  <expand macro="requirements" />
+  <version_command>mimodd version -q</version_command>
+  <command>
+    mimodd info "$ifile" -o "$outputfile" --verbose --oformat $oformat
+  </command>
+
+  <inputs>
+    <param format="bam,sam,vcf,bcf,fasta" label="input file" name="ifile" type="data" />
+    <param label="output format" name="oformat" type="select">
+        <option value="txt">text</option>
+        <option value="html">html</option>
+    </param>
+  </inputs>
+
+  <outputs>
+    <data format="txt" label="Sample Info on ${on_string}" name="outputfile">
+      <change_format>
+	    <when format="html" input="oformat" value="html" />
+      </change_format>
+    </data>
+  </outputs>
+
+<help>
+.. class:: infomark
+
+   **What it does**
+
+The tool inspects the input file and generates a report summarizing its contents.
+
+It autodetects and works with most file formats produced by MiModD, i.e., **SAM / BAM, vcf / bcf and fasta**, and produces a standardized report for all of them.
+
+</help>
+</tool>