# HG changeset patch
# User wolma
# Date 1510434090 18000
# Node ID 5566923e60a1cceb9bbab12f748575f46c5f90aa
planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit c4b4112ac89be8b7e43427220473269e52cb9797
diff -r 000000000000 -r 5566923e60a1 annotate_variants.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/annotate_variants.xml Sat Nov 11 16:01:30 2017 -0500
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+ with functional effects on genes and transcripts
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+ macros.xml
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+ 0:
+ --codon-tables
+ #if $codon_tables.genome_codon_table.strip():
+ '$codon_tables.genome_codon_table'
+ #end if
+ #for $table_spec in $codon_tables.table_specs:
+ '$table_spec.contig:$table_spec.table'
+ #end for
+ #end if
+ #if $snpeff_settings.ud:
+ --ud ${snpeff_settings.ud}
+ #end if
+ #if $snpeff_settings.filter:
+ #echo ' '.join(str($snpeff_settings.filter).split(','))
+ #end if
+ --ofile '$ofile'
+ --verbose
+ ]]>
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+ value.strip()
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+ snpeff_settings['stats']
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diff -r 000000000000 -r 5566923e60a1 macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Sat Nov 11 16:01:30 2017 -0500
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+ 0.1.8
+ 0.1.8
+ 0.1.8_0
+ `__
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+- The `MiModD help forum `__ reachable also via `email `__
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+ ]]>
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+ MiModD
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+@misc{
+maier_mimodd_2014,
+title = {{MiModD} - {Mutation} {Identification} in {Model} {Organism} {Genomes}},
+shorttitle = {{MiModD}},
+url = {https://sourceforge.net/projects/mimodd/},
+author = {Maier, Wolfgang and Moos, Katharina and Seifert, Mark and Baumeister, Ralf},
+year = {2014}, publisher={SourceForge.net} }
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diff -r 000000000000 -r 5566923e60a1 snpeff_genomes.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/snpeff_genomes.xml Sat Nov 11 16:01:30 2017 -0500
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+ available for variant annotation with MiModD
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+ macros.xml
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