view tool-data/packaged_annotation_data.loc.sample @ 0:632d33df6758 draft

"planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"

#This file describes genome annotation data packages and their contents
#available on the server.
#Such data can consist of any number of individual files in a variety of
#formats (e.g., bed, vcf, tabular) describing any features with respect to the
#genome with the associated dbkey.
#The directory referenced in the <path> column of the table is expected to
#contain the file listed under <data_id> and a meta.yml file with details about
#the annotation package volume and all of its contents.
#This data table has the format (white space characters are TAB characters):
#
#<value>														<dbkey>			<data_name>																	<data_id>		<data_format>	<package_id>								<package_name>					<path>
#
#So, packaged_annotation_data.loc tables could look like this:
#
#dbSNP_hg19__1__1:dbSNP.tidy									hg19			dbSNP tidy (b147.20160601, hg19; from dbSNP/vol:1/build:1)					dbSNP.tidy		vcf_bgzip		dbSNP__hg19__1__1					dbSNP (hg19, vol:1/build:1)							/path/to/packaged_annotation_data/hg19/dbSNP/1/1
#Cancer_variant_data__1__1:hotspots.data						hg19			CancerHotspots (v2, hg19; from Cancer variant data/vol:1/build:1)				hotspots.data	bed				Cancer_variant_data__hg19__1__1		Cancer variant data (hg19, vol:1/build:1)			/path/to/packaged_annotation_data/hg19/Cancer_variant_data/1/1
#Cancer_genes_data__1__1:civic.genes							hg19			CIViC genes	(01-Feb-2019, hg19; from Cancer gene data/vol:1/build:1)			civic.genes		tabular			Cancer_gene_data__hg19__1__1		Cancer gene data (hg19, vol:1/build:1)					/path/to/packaged_annotation_data/hg19/Cancer_variant_data/1/1
#SARS-CoV-2_amplicon_primer_sets__NC_045512.2__1__1:ARTICv3		NC_045512.2		ARTIC (v3, NC_045512.2; from SARS-CoV-2 amplicon primer sets/vol:1/build:1)	ARTICv3			bed6			SARS-CoV-2_amplicon_primer_sets__NC_045512.2__1__1	SARS-CoV-2 amplicon primer sets (NC_045512.2, vol:1/build:1)	/path/to/packaged_annotation_data/NC_045512.2/SARS-CoV-2_amplicon_primer_sets/1/1
#SARS-CoV-2_amplicon_primer_sets__NC_045512.2__1__1:ARTICv4		NC_045512.2		ARTIC (v4, NC_045512.2; from SARS-CoV-2 amplicon primer sets/vol:1/build:1)	ARTICv4			bed6			SARS-CoV-2_amplicon_primer_sets__NC_045512.2__1__1	SARS-CoV-2 amplicon primer sets (NC_045512.2, vol:1/build:1)	/path/to/packaged_annotation_data/NC_045512.2/SARS-CoV-2_amplicon_primer_sets/1/1
#