Mercurial > repos > wolma > data_manager_packaged_annotation_data

annotate data_manager_conf.xml @ 1:691bcbfd775d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
author wolma
date Thu, 16 Dec 2021 18:50:18 +0000
parents 632d33df6758
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
1 <?xml version="1.0"?>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
2 <data_managers>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
3 <data_manager tool_file="data_manager/install_packaged_annotation_data.xml" id="data_manager_packaged_annotation_data" >
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
4 <data_table name="packaged_annotation_data"> <!-- Defines a Data Table to be modified. -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
5 <output> <!-- Handle the output of the Data Manager Tool -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
7 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
8 <column name="data_name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
9 <column name="data_id" /> <!-- columns that are going to be specified by the Data Manager Tool -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
10 <column name="data_format" /> <!-- columns that are going to be specified by the Data Manager Tool -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
11 <column name="package_id" /> <!-- columns that are going to be specified by the Data Manager Tool -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
12 <column name="package_name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
13 <column name="path" output_ref="out_file" >
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
14 <move type="directory" relativize_symlinks="True">
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">packaged_annotation_data/${dbkey}/${package_id}/${path}</target>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
16 </move>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/packaged_annotation_data/${dbkey}/${package_id}/${path}/</value_translation>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
18 <value_translation type="function">abspath</value_translation>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
19 </column>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
20 </output>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
21 </data_table>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
22 </data_manager>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
23 </data_managers>
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
24
632d33df6758 "planemo upload commit 3dc5291eccd1fb516be67694c18a27bda5f69f91"
wolma
parents:
diff changeset
25